I have Jenkinsfile with specific node allocation and git checkout on that node, but "github organization folder plugin" is starting build on master and checking out repository on master with default timeout values, before starting my Jenkinsfile script, so I am getting timeouts, because my repository is really big and 10min is simply too small.

my Jenkinsfile looks like this:

node("*Not_master_node*")
{
      checkout(
             [$class: 'GitSCM', 
			branches: [[name: "${env.BRANCH_NAME}"]], 
			doGenerateSubmoduleConfigurations: false, 
			extensions: 
			[
				[$class: 'CleanBeforeCheckout'],
				[$class: 'CheckoutOption', timeout: 180], 
				[$class: 'CloneOption', 
					depth: 0, 
					noTags: false, 
					shallow: true, 
					timeout: *180*
				]
                          ], 
					submoduleCfg: [], 
					userRemoteConfigs: [[credentialsId: '...', url: 'https://github.com/...']]]
				)
}

I found difference in output between 'github organization' and 'multibranch pipeline' project build output, and this is propably reason why I am getting timeouts in one and on the other one not.

'github organization':

Started by user (...)
Connecting to https://api.github.com using (...)
> /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from 2 remote Git repositories
> /usr/bin/git config remote.origin.url https://github.com/(...) # timeout=10
Fetching upstream changes from https://github.com/(...).git
> /usr/bin/git --version # timeout=10
using .gitcredentials to set credentials
> /usr/bin/git config --local credential.username (...) # timeout=10
> /usr/bin/git config --local credential.helper store --file=/tmp/(...) # timeout=10
> /usr/bin/git -c core.askpass=true fetch --tags --progress https://github.com/(...).git +refs/heads/:refs/remotes/origin/

ERROR: Timeout after 10 minutes
> /usr/bin/git config --local --remove-section credential # timeout=10
ERROR: Error fetching remote repo 'origin'
hudson.plugins.git.GitException: Failed to fetch from https://github.com/(...).git
at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:799)
at hudson.plugins.git.GitSCM.retrieveChanges(GitSCM.java:1055)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1086)
at org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:109)
at org.jenkinsci.plugins.workflow.cps.CpsScmFlowDefinition.create(CpsScmFlowDefinition.java:108)
at org.jenkinsci.plugins.workflow.multibranch.SCMBinder.create(SCMBinder.java:85)
at org.jenkinsci.plugins.workflow.job.WorkflowRun.run(WorkflowRun.java:206)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:404)
Caused by: hudson.plugins.git.GitException: Command "/usr/bin/git -c core.askpass=true fetch --tags --progress https://github.com/(...).git +refs/heads/:refs/remotes/origin/" returned status code 143:

and the same fragment of log from 'multibranch pipeline':

Started by user (...)
Setting origin to https://github.com/(...)
Fetching origin...
> /usr/bin/git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> /usr/bin/git config remote.origin.url https://github.com/(...) # timeout=10
Fetching upstream changes from https://github.com(...)
> /usr/bin/git --version # timeout=10
using .gitcredentials to set credentials
> /usr/bin/git config --local credential.username oocpawel # timeout=10
> /usr/bin/git config --local credential.helper store --file=/tmp/(...) # timeout=10
> /usr/bin/git -c core.askpass=true fetch --tags --progress https://github.com/Calnex/CAT +refs/heads/:refs/remotes/origin/ --depth=1 # timeout=120

the difference is in fetch line, originally 'multibranch pipeline' has timeout 120min and 'github organization' is using default 10min