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Improvement
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Resolution: Won't Fix
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Major
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non OS dependent
currently jenkins configuration files are synched directly to the root directory of a repository, which is creating quite a mess having all of them at the same level with other sources in one single repo.
It should be possible to define e.g. the relative path inside the repo where the configuration is synched to.
This configuration should be done when configuring the plugin.
focus should be on git (if separate implementation is necessary)
I don't think separate implementation for each SCM is necessary.
Providing a new relative path at scm-sync-configuration config section (which then could be used in ScmSyncConfigBusiness. getCheckoutScmDirectoryAbsolutePath()) would be sufficient.