I have a working flow that graphs well.
When I disable any job in the flow, run it, wait for completion, and click "Build Graph", the graph doesn't appear.
When I re-enable the job and repeat, the graph does appear.

There is a stack trace in my Jenkins log:

Caught exception evaluating: it.graph in /view/ViewName/job/JobName/7/BuildGraph/. Reason: java.lang.reflect.InvocationTargetException
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.commons.jexl.util.PropertyExecutor.execute(PropertyExecutor.java:125)
at org.apache.commons.jexl.util.introspection.UberspectImpl$VelGetterImpl.invoke(UberspectImpl.java:314)
at org.apache.commons.jexl.parser.ASTArrayAccess.evaluateExpr(ASTArrayAccess.java:185)
at org.apache.commons.jexl.parser.ASTIdentifier.execute(ASTIdentifier.java:75)
at org.apache.commons.jexl.parser.ASTReference.execute(ASTReference.java:83)
at org.apache.commons.jexl.parser.ASTReference.value(ASTReference.java:57)
at org.apache.commons.jexl.parser.ASTReferenceExpression.value(ASTReferenceExpression.java:51)
at org.apache.commons.jexl.ExpressionImpl.evaluate(ExpressionImpl.java:80)
at hudson.ExpressionFactory2$JexlExpression.evaluate(ExpressionFactory2.java:74)
at org.apache.commons.jelly.tags.core.CoreTagLibrary$3.run(CoreTagLibrary.java:134)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.CallTagLibScript$1.run(CallTagLibScript.java:99)
at org.apache.commons.jelly.tags.define.InvokeBodyTag.doTag(InvokeBodyTag.java:91)
at org.apache.commons.jelly.impl.TagScript.run(TagScript.java:269)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.apache.commons.jelly.tags.core.CoreTagLibrary$1.run(CoreTagLibrary.java:98)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.apache.commons.jelly.tags.core.CoreTagLibrary$2.run(CoreTagLibrary.java:105)
at org.kohsuke.stapler.jelly.CallTagLibScript.run(CallTagLibScript.java:120)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.CallTagLibScript$1.run(CallTagLibScript.java:99)
at org.apache.commons.jelly.tags.define.InvokeBodyTag.doTag(InvokeBodyTag.java:91)
at org.apache.commons.jelly.impl.TagScript.run(TagScript.java:269)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.ReallyStaticTagLibrary$1.run(ReallyStaticTagLibrary.java:99)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.ReallyStaticTagLibrary$1.run(ReallyStaticTagLibrary.java:99)
at org.kohsuke.stapler.jelly.ReallyStaticTagLibrary$1.run(ReallyStaticTagLibrary.java:99)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.ReallyStaticTagLibrary$1.run(ReallyStaticTagLibrary.java:99)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.kohsuke.stapler.jelly.ReallyStaticTagLibrary$1.run(ReallyStaticTagLibrary.java:99)
at org.apache.commons.jelly.impl.ScriptBlock.run(ScriptBlock.java:95)
at org.apache.commons.jelly.tags.core.CoreTagLibrary$2.run(CoreTagLibrary.java:105)
at org.kohsuke.stapler.jelly.CallTagLibScript.run(CallTagLibScript.java:120)
at org.apache.commons.jelly.tags.core.CoreTagLibrary$2.run(CoreTagLibrary.java:105)
at org.kohsuke.stapler.jelly.JellyViewScript.run(JellyViewScript.java:81)
at org.kohsuke.stapler.jelly.DefaultScriptInvoker.invokeScript(DefaultScriptInvoker.java:63)
at org.kohsuke.stapler.jelly.DefaultScriptInvoker.invokeScript(DefaultScriptInvoker.java:53)
at org.kohsuke.stapler.jelly.JellyClassTearOff.serveIndexJelly(JellyClassTearOff.java:112)
at org.kohsuke.stapler.jelly.JellyFacet.handleIndexRequest(JellyFacet.java:127)
at org.kohsuke.stapler.Stapler.tryInvoke(Stapler.java:717)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:858)
at org.kohsuke.stapler.MetaClass$12.dispatch(MetaClass.java:390)
at org.kohsuke.stapler.Stapler.tryInvoke(Stapler.java:728)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:858)
at org.kohsuke.stapler.MetaClass$12.dispatch(MetaClass.java:390)
at org.kohsuke.stapler.Stapler.tryInvoke(Stapler.java:728)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:858)
at org.kohsuke.stapler.MetaClass$6.doDispatch(MetaClass.java:248)
at org.kohsuke.stapler.NameBasedDispatcher.dispatch(NameBasedDispatcher.java:53)
at org.kohsuke.stapler.Stapler.tryInvoke(Stapler.java:728)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:858)
at org.kohsuke.stapler.MetaClass$6.doDispatch(MetaClass.java:248)
at org.kohsuke.stapler.NameBasedDispatcher.dispatch(NameBasedDispatcher.java:53)
at org.kohsuke.stapler.Stapler.tryInvoke(Stapler.java:728)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:858)
at org.kohsuke.stapler.Stapler.invoke(Stapler.java:631)
at org.kohsuke.stapler.Stapler.service(Stapler.java:225)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1494)
at hudson.util.PluginServletFilter$1.doFilter(PluginServletFilter.java:96)
at hudson.plugins.greenballs.GreenBallFilter.doFilter(GreenBallFilter.java:58)
at hudson.util.PluginServletFilter$1.doFilter(PluginServletFilter.java:99)
at hudson.util.PluginServletFilter.doFilter(PluginServletFilter.java:88)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1482)
at hudson.security.csrf.CrumbFilter.doFilter(CrumbFilter.java:48)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1482)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:84)
at hudson.security.UnwrapSecurityExceptionFilter.doFilter(UnwrapSecurityExceptionFilter.java:51)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at jenkins.security.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:117)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at org.acegisecurity.providers.anonymous.AnonymousProcessingFilter.doFilter(AnonymousProcessingFilter.java:125)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at org.acegisecurity.ui.rememberme.RememberMeProcessingFilter.doFilter(RememberMeProcessingFilter.java:142)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at org.acegisecurity.ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java:271)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at org.acegisecurity.ui.basicauth.BasicProcessingFilter.doFilter(BasicProcessingFilter.java:174)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at jenkins.security.ApiTokenFilter.doFilter(ApiTokenFilter.java:64)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at org.acegisecurity.context.HttpSessionContextIntegrationFilter.doFilter(HttpSessionContextIntegrationFilter.java:249)
at hudson.security.HttpSessionContextIntegrationFilter2.doFilter(HttpSessionContextIntegrationFilter2.java:67)
at hudson.security.ChainedServletFilter$1.doFilter(ChainedServletFilter.java:87)
at hudson.security.ChainedServletFilter.doFilter(ChainedServletFilter.java:76)
at hudson.security.HudsonFilter.doFilter(HudsonFilter.java:164)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1482)
at org.kohsuke.stapler.compression.CompressionFilter.doFilter(CompressionFilter.java:46)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1482)
at hudson.util.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:81)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1474)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:499)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:533)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
at org.eclipse.jetty.server.Server.handle(Server.java:370)
at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489)
at org.eclipse.jetty.server.AbstractHttpConnection.headerComplete(AbstractHttpConnection.java:949)
at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.headerComplete(AbstractHttpConnection.java:1011)
at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:644)
at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:235)
at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668)
at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52)
at winstone.BoundedExecutorService$1.run(BoundedExecutorService.java:77)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.NullPointerException
at org.jenkinsci.plugins.buildgraphview.BuildExecution.hashCode(BuildExecution.java:87)
at java.util.HashMap.hash(Unknown Source)
at java.util.HashMap.getEntry(Unknown Source)
at java.util.HashMap.containsKey(Unknown Source)
at java.util.HashMap$KeySet.contains(Unknown Source)
at org.jgrapht.graph.AbstractBaseGraph.containsVertex(Unknown Source)
at org.jgrapht.graph.AbstractBaseGraph.addVertex(Unknown Source)
at org.jenkinsci.plugins.buildgraphview.BuildGraph.computeGraphFrom(BuildGraph.java:67)
at org.jenkinsci.plugins.buildgraphview.BuildGraph.getGraph(BuildGraph.java:56)
... 121 more