I just upgraded from 329 to 352 and now the settings for the doxygen
plugin only allow one to specify the doxyfile, however the help still
suggests there is an option for specifying the html directory. Because
of the way that I'm doing my builds the doxyfile doesn't have the right
path (missing a prefix) so Hudson can't find the output. Is there a fix
coming for this?

My workaround is to just use the javadoc plugin instead. Any reason to have both plugins here then?