Maybe there is another affected plugin breaking the layout
I took a look at the attached plugins.csv and indeed there is another plugin breaking the layout: Team Foundation Server 5.157.1. Team Foundation Server is known to be incompatible with the Configuration Form Modernization project (see JENKINS-64241). Team Foundation Server has also been suspended due to licensing issues and is not available in new installations (see INFRA-2751). The recommendation is to disable or remove Team Foundation Server.
bloodrxt, can you please confirm that disabling or removing Team Foundation Server resolves your problem? If so, we can close this bug to cover Custom Tools and leave JENKINS-64241 open to cover Team Foundation Server.
bloodrxt see https://issues.jenkins.io/browse/JENKINS-64072
each case is different and needs a full plugin list to reproduce, normally caused by old plugins.