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Bug
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Resolution: Not A Defect
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Minor
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Jenkins version is 1.597
PMD Plugin is 3.40
PMD version is 5.2.3 (also tried 4.2.6 which seems to be the latest supported by the plugin with the same results)
OS is Debian 8.0 (jessie)
I'm trying to parse results of PMD execution with PMD plugin but I'm getting this error:
org.xml.sax.SAXException: Input stream is not a PMD file.
at hudson.plugins.pmd.parser.PmdParser.parse(PmdParser.java:72)
at hudson.plugins.analysis.core.AbstractAnnotationParser.parse(AbstractAnnotationParser.java:54)
at hudson.plugins.analysis.core.FilesParser.parseFile(FilesParser.java:323)
at hudson.plugins.analysis.core.FilesParser.parseFiles(FilesParser.java:281)
at hudson.plugins.analysis.core.FilesParser.parserCollectionOfFiles(FilesParser.java:232)
at hudson.plugins.analysis.core.FilesParser.invoke(FilesParser.java:201)
at hudson.plugins.analysis.core.FilesParser.invoke(FilesParser.java:31)
at hudson.FilePath.act(FilePath.java:989)
at hudson.FilePath.act(FilePath.java:967)
at hudson.plugins.pmd.PmdPublisher.perform(PmdPublisher.java:142)
at hudson.plugins.analysis.core.HealthAwarePublisher.perform(HealthAwarePublisher.java:152)
at hudson.plugins.analysis.core.HealthAwareRecorder.perform(HealthAwareRecorder.java:347)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:770)
at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:734)
at hudson.model.Build$BuildExecution.post2(Build.java:183)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:683)
at hudson.model.Run.execute(Run.java:1743)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:89)
at hudson.model.Executor.run(Executor.java:240)
Command line execution from within a Execute Shell code block for PMD version 5.2.3 is: /opt/pmd-bin-5.2.3/bin/run.sh cpd --minimum-tokens 100 --files files-dir --language cpp --format xml --encoding UTF8 > pmd.xml
Command line execution from within a Execute Shell code block for PMD version 4.2.6 is: java -cp /opt/pmd-bin-4.2.6/lib/asm-3.2.jar:/opt/pmd-bin-4.2.6/lib/jaxen-1.1.1.jar:/opt/pmd-bin-4.2.6/lib/junit-4.4.jar:/opt/pmd-bin-4.2.6/lib/pmd-4.2.6.jar net.sourceforge.pmd.cpd.CPD --minimum-tokens 100 --files segmenter/ --language cpp --format xml > pmd.xml
Please find attached the pmd.xml output file.
I'm not sure if this is a bug or I'm doying something wrong, but I cannot find a solution to this problem.
[JENKINS-26638] org.xml.sax.SAXException: Input stream is not a PMD file
Xavier Carol
added a comment - Thanks for the clarification. 
The PMD plug-in reads only files from PMD. In order to read CPD files (which check for duplicate code) you need to use the dry plug-in. (Even though CPD is a part of the PMD suite I deecided to provide that functionality in a seperate plug-in since a different UI is needed.)